Healthcare · Medicaid & state programs
Medicaid & State Agency Audits for Waiver and Community Providers
Audits, reviews and agreed-upon procedures your state program will accept, for adult day, disability and behavioral health providers.

Medicaid & state agency audits

Audits for providers paid through Medicaid waivers and state health programs

Greywood CPA audits and reviews financial statements, and performs agreed-upon procedures, for healthcare providers paid through Medicaid home and community-based services waivers and state health programs: adult day programs, disability and IDD service providers, behavioral health organizations and other community providers. We are a licensed CPA firm (Virginia Board of Accountancy firm license #134961) working nationwide at a fixed fee.

What your state requires depends on the program. Some states require an independent CPA audit once your state funding passes a threshold, some audit your Medicaid cost report themselves, and some name a specific report in your provider contract. We read your contract and confirm the requirement before we quote.

Last reviewed: November 2026

Which providers need a state agency audit?

Providers who are paid by a state Medicaid agency, a state health or human services department, or a county program on the state's behalf. The most common are:

  • Adult day and day habilitation programs billing Medicaid waiver services
  • Disability and IDD service providers running residential, supported living or employment programs
  • Behavioral health and substance use providers funded by state contracts or federal block grants passed through the state
  • Community health and prevention programs funded by state health department grants

Home care or in-home services agency? Your rules are covered on the home care agency audits page.

The three ways states set audit requirements

Every state runs its programs differently, but almost all of them fall into one of three patterns:

PatternWhat happensExample
CPA audit by funding levelThe state requires an independent CPA audit or review once you spend a set amount of state money in a yearIllinois sets audit levels by state award spending under its grant accountability law
State audits your cost reportYou file a Medicaid cost report; the state or its contractor audits it. No CPA audit is required for the report itselfNew York home care cost reports; Texas HHSC provider cost reports
Contract names the reportYour provider agreement or grant agreement requires audited or reviewed statements, or specific procedures, by a deadlineCommon for county-administered and managed care contracts

Many providers face more than one: for example a state cost report audit plus a lender that wants audited statements, or a Single Audit because federal block grant money passes through the state.

Audit, review or agreed-upon procedures?

Limited assuranceReview

Accepted by some state programs below their audit thresholds. Lower cost.

Reasonable assuranceAudit

An opinion on your financial statements, under GAAS or Government Auditing Standards. What most funded providers need.

Specific findingsAgreed-upon procedures

Procedures the state agency specifies, such as testing billed units or cost allocations, with a report of findings.

See our agreed-upon procedures service for engagements a state agency defines.

Getting ready for a state cost report audit

Where the state audits your cost report, the auditors test it against your books. Costs you can't document are typically disallowed, and that can reduce your rates. What helps most:

  • A general ledger that ties to the cost report, line by line
  • Documented allocation methods for shared costs such as administration, rent and management fees
  • Payroll and timekeeping records that support direct care hours
  • Related-party costs identified and supported

We prepare reconciled, reviewed or audited financial statements that your cost report is built on, so the numbers hold up when the state tests them.

What auditors test at Medicaid-funded providers

Billed services against service records

Units billed to Medicaid compared with attendance, progress notes, visit records and staff timesheets.

Allowable costs

State programs limit what they pay for. Unallowable items, such as entertainment or personal expenses, have to be kept out of program costs.

Revenue and receivables by payer

Medicaid, managed care, county and private-pay balances reconciled to remittance reports.

Related parties

Rent or management fees paid to owners' other companies must be disclosed and, for cost reports, are often limited to cost.

How the engagement works

  1. Scoping callDay 1

    A 30-minute call about your organization, who needs the report and your deadline.

  2. Fixed-fee proposalWithin 1–3 business days

    Scope, report type, timeline and one fixed fee, in writing.

  3. One request listWeek 1

    Everything we need, uploaded through a secure portal.

  4. Fieldwork and draftSet in your proposal

    Remote testing, then a draft for your review.

  5. Signed reportOn or before the agreed date

    A CPA partner signs, and we walk you or your board through the results.

Why providers choose Greywood CPA

  • Fixed fee, agreed first. No hourly billing and no surprise invoices.
  • Senior people on your file. Every engagement is led by a senior professional and signed off by a CPA partner. Meet the team.
  • Licensed and registered. Virginia Board of Accountancy firm license #134961, AICPA member, with out-of-state registrations where required. See our credentials.

Related

Medicaid and state agency audit FAQs

Does a Medicaid waiver provider need a CPA audit?

Not always. Some states require an independent CPA audit once state funding passes a threshold, some audit your Medicaid cost report themselves, and some name a specific report in your provider contract. Your provider agreement states what applies.

What is an agreed-upon procedures engagement for a state agency?

The state agency specifies procedures, such as testing billed units or how costs were allocated, and the CPA performs them and reports the findings. It is not an audit opinion, but some agencies require it instead of, or in addition to, an audit.

Can a state cost report audit disallow our costs?

Yes. Costs you cannot document, or that the program does not allow, are typically disallowed, which can lower your future rates. Reconciled books and documented allocation methods are the best protection.

Do block grant funds count toward a Single Audit?

Federal block grant money passed through a state is still federal money, so it counts toward the $1,000,000 federal spending threshold that triggers a Single Audit for nonprofits.

How do your fees work?

We quote one fixed fee in writing before any work starts, based on your size, the number of programs and payers, the condition of your books and the report your state requires.

Have a state program deadline? Let's plan backward from it.

Send us your provider agreement. A senior CPA will confirm what your state requires and send a fixed-fee proposal within 1–3 business days.