Healthcare · Federal grants
Single Audits for Community Health Centers & Health Nonprofits
Fixed-fee Single Audits for health nonprofits spending $1M or more in federal awards, from HRSA, Ryan White and SAMHSA funding.

Single Audits for health nonprofits

Single Audits for community health centers and health nonprofits on federal grants

Greywood CPA performs Single Audits for health nonprofits that spend $1,000,000 or more in federal awards in a fiscal year, including community health centers, behavioral health and substance use organizations, and public health nonprofits. We are a licensed CPA firm (Virginia Board of Accountancy firm license #134961) working nationwide, at a fixed fee.

The $1,000,000 threshold applies to fiscal years beginning on or after October 1, 2024, and counts federal money received directly and passed through a state or another organization. The reporting package is due to the Federal Audit Clearinghouse within 30 days after you receive the auditor's reports or 9 months after year-end, whichever is earlier.

Last reviewed: November 2026

Does your health nonprofit need a Single Audit?

Add up every federal dollar you spent during the fiscal year, whether it came directly from a federal agency or passed through a state, county or another nonprofit. If the total is $1,000,000 or more, you need a Single Audit for that year.

  • Count expenditures, not awards. A three-year $2M grant spent at $600,000 a year doesn't trigger it on its own.
  • Pass-through money counts. Federal block grant funds a state passes to you are federal awards.
  • Loans and some non-cash assistance count too, depending on the program.

Spending under $1,000,000? You are exempt from the federal audit requirement that year, but your grant agreements, state rules or lenders may still require a financial statement audit.

Federal health programs that commonly trigger a Single Audit

FundingTypical recipients
HRSA Health Center Program (Section 330) grantsCommunity health centers and FQHCs
Ryan White HIV/AIDS ProgramHIV care and support organizations
SAMHSA block grants passed through the stateBehavioral health and substance use providers
Public health and prevention grants passed through state health departmentsCommunity health and prevention nonprofits
Other federal health and human services grantsHealth and social service nonprofits

Each program has its own compliance rules, published by the federal government in the annual Compliance Supplement. Those rules decide what we test.

How auditors choose which programs to test

Not every federal program is tested in depth. The auditor selects major programs using a risk-based process:

  • Type A programs are the larger ones. For organizations spending up to $34 million in federal awards, any program with $1,000,000 or more in expenditures is Type A.
  • Type B programs are the smaller ones. Some are selected based on risk.
  • Programs with prior audit findings or new, complex rules are more likely to be selected.

Organizations that qualify as low-risk auditees get fewer programs tested. To qualify, you need two years in a row of timely Single Audits, clean opinions, no material weaknesses, no going-concern doubt, and no significant findings on Type A programs.

What a Single Audit tests

For each major program, we test the compliance requirements that the Compliance Supplement marks as applicable. In health programs the ones that most often produce findings are:

  • Allowable costs and cost principles, including how shared costs are allocated across grants
  • Eligibility, such as sliding-fee discount programs and patient eligibility for funded services
  • Reporting, meaning federal financial reports that match your books
  • Procurement, with written procurement policies followed for purchases
  • Subrecipient monitoring if you pass funds on to other organizations
  • Period of performance, with costs charged to the right grant year

We also report on internal control over compliance, and on your financial statements under Government Auditing Standards.

The SEFA, the reporting package and the Clearinghouse

The Schedule of Expenditures of Federal Awards (SEFA) lists every federal program you spent money on, with its Assistance Listing number and amount. It is the starting point of the audit, and errors in it are a common finding.

After the audit, the reporting package (financial statements, SEFA, auditor's reports, findings and your corrective action plan) and a data collection form are submitted to the Federal Audit Clearinghouse. We support you through that submission.

How a Single Audit engagement works

  1. Scoping callDay 1

    A 30-minute call about your organization, who needs the report and your deadline.

  2. Fixed-fee proposalWithin 1–3 business days

    Scope, report type, timeline and one fixed fee, in writing.

  3. One request listWeek 1

    Everything we need, uploaded through a secure portal.

  4. Fieldwork and draftSet in your proposal

    Remote testing, then a draft for your review.

  5. Signed reportOn or before the agreed date

    A CPA partner signs, and we walk you or your board through the results.

Why health nonprofits choose Greywood CPA

  • Fixed fee, agreed first. No hourly billing and no surprise invoices.
  • Senior people on your file. Every engagement is led by a senior professional and signed off by a CPA partner. Meet the team.
  • Licensed and registered. Virginia Board of Accountancy firm license #134961, AICPA member, with out-of-state registrations where required. See our credentials.

Related

Health nonprofit Single Audit FAQs

What is the Single Audit threshold?

A nonprofit that spends $1,000,000 or more in federal awards in a fiscal year needs a Single Audit, for fiscal years beginning on or after October 1, 2024. Before that, the threshold was $750,000.

Do pass-through funds from my state count?

Yes. Federal money passed to you through a state, county or another nonprofit is still a federal award and counts toward the $1,000,000 threshold.

When is the Single Audit due?

The reporting package is due to the Federal Audit Clearinghouse within 30 days after you receive the auditor's reports or 9 months after your fiscal year-end, whichever comes first.

What is a major program?

A federal program selected for in-depth compliance testing using a risk-based process. For organizations spending up to $34 million in federal awards, programs with $1,000,000 or more in expenditures are Type A and are the main candidates.

What happens if the audit has findings?

Findings are reported in the schedule of findings and questioned costs, and you prepare a corrective action plan. The federal agency or pass-through entity follows up, and repeat findings can affect future funding and your low-risk status.

How do your fees work?

We quote one fixed fee in writing before any work starts, based on your size, the number of federal programs, how many are major programs and the condition of your records.

Grant reporting deadline coming? Let's plan backward from it.

Send us last year's SEFA or a list of your federal grants. A senior CPA will confirm your requirement and send a fixed-fee proposal within 1–3 business days.